{ "_id": "6a1f20e3b401979e734204d1", "Package": "RaMS", "Type": "Package", "Title": "R Access to Mass-Spec Data", "Version": "1.4.3", "Authors@R": "c(\nperson(given = \"William\", family = \"Kumler\", email = \"wkumler@uw.edu\",\nrole = c(\"aut\", \"cre\", \"cph\")),\nperson(given = \"Ricardo\", family = \"Cunha\", role = \"ctb\"),\nperson(given = \"Ethan\", family = \"Bass\", role = \"ctb\")\n)", "Maintainer": "William Kumler ", "Description": "R-based access to mass-spectrometry (MS) data. While many\npackages exist to process MS data, many of these make it\ndifficult to access the underlying mass-to-charge ratio (m/z),\nintensity, and retention time of the files themselves. This\npackage is designed to format MS data in a tidy fashion and\nallows the user perform the plotting and analysis.", "License": "MIT + file LICENSE", "URL": "https://github.com/wkumler/RaMS", "BugReports": "https://github.com/wkumler/RaMS/issues", "Encoding": "UTF-8", "RoxygenNote": "7.3.1", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libxml2-dev", "Repository": "https://wkumler.r-universe.dev", "Date/Publication": "2025-09-17 21:00:25 UTC", "RemoteUrl": "https://github.com/wkumler/rams", "RemoteRef": "HEAD", "RemoteSha": "f6f3bb0b8540fbea777672ad1d55cb092466401d", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-16 07:47:31 UTC", "User": "root" }, "Author": "William Kumler [aut, cre, cph],\nRicardo Cunha [ctb],\nEthan Bass [ctb]", "MD5sum": "7b0ee2fdd7443f801c58fcfc91274895", "_user": "wkumler", "_type": "src", "_file": "RaMS_1.4.3.tar.gz", "_fileid": "27eebafe64f0fcd34711346132b6fd6c39b78da9d1c862a9594a7c1bc1f30293", "_filesize": 3979905, "_sha256": 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retention times", "topics": [ "editMSfileRTs" ] }, { "page": "getEncoded", "title": "Convert from compressed binary to R numeric vector", "topics": [ "getEncoded" ] }, { "page": "giveEncoding", "title": "Convert from R numeric vector to compressed binary", "topics": [ "giveEncoding" ] }, { "page": "grabAccessionData", "title": "Get arbitrary metadata from an mzML file by accession number", "topics": [ "grabAccessionData" ] }, { "page": "grabMSdata", "title": "Grab mass-spectrometry data from file(s)", "topics": [ "grabMSdata" ] }, { "page": "grabMzmlBPC", "title": "Grab the BPC or TIC from a file", "topics": [ "grabMzmlBPC" ] }, { "page": "grabMzmlDAD", "title": "Extract the DAD data from an mzML nodeset", "topics": [ "grabMzmlDAD" ] }, { "page": "grabMzmlData", "title": "Get mass-spectrometry data from an mzML file", "topics": [ "grabMzmlData" ] }, { "page": "grabMzmlEncodingData", "title": "Helper function to extract mzML file encoding data", "topics": [ "grabMzmlEncodingData" ] }, { "page": "grabMzmlMetadata", "title": "Helper function to extract mzML file metadata", "topics": [ "grabMzmlMetadata" ] }, { "page": "grabMzmlMS1", "title": "Extract the MS1 data from an mzML nodeset", "topics": [ "grabMzmlMS1" ] }, { "page": "grabMzmlMS2", "title": "Extract the MS2 data from an mzML nodeset", "topics": [ "grabMzmlMS2" ] }, { "page": "grabMzmlMS3", "title": "Extract the MS3 data from an mzML nodeset", "topics": [ "grabMzmlMS3" ] }, { "page": "grabMzxmlBPC", "title": "Grab the BPC or TIC from a file", "topics": [ "grabMzxmlBPC" ] }, { "page": "grabMzxmlData", "title": "Get mass-spectrometry data from an mzXML file", "topics": [ "grabMzxmlData" ] }, { "page": "grabMzxmlEncodingData", "title": "Helper function to extract mzXML file metadata", "topics": [ "grabMzxmlEncodingData" ] }, { "page": "grabMzxmlMetadata", "title": "Helper function to extract mzXML file metadata", "topics": [ "grabMzxmlMetadata" ] }, { "page": "grabMzxmlMS1", "title": "Extract the MS1 data from an mzXML nodeset", "topics": [ "grabMzxmlMS1" ] }, { "page": "grabMzxmlMS2", "title": "Extract the MS2 data from an mzXML nodeset", "topics": [ "grabMzxmlMS2" ] }, { "page": "grabMzxmlMS3", "title": "Extract the MS3 data from an mzXML nodeset", "topics": [ "grabMzxmlMS3" ] }, { "page": "grabMzxmlSpectraMzInt", "title": "Extract the mass-to-charge data from the spectra of an mzXML nodeset", "topics": [ "grabMzxmlSpectraMzInt" ] }, { "page": "grabMzxmlSpectraPremz", "title": "Extract the precursor mass from the spectra of an mzXML nodeset", "topics": [ "grabMzxmlSpectraPremz" ] }, { "page": "grabMzxmlSpectraRt", "title": "Extract the retention time from the spectra of an mzXML nodeset", "topics": [ "grabMzxmlSpectraRt" ] }, { "page": "grabMzxmlSpectraVoltage", "title": "Extract the collision energies from the spectra of an mzXML nodeset", "topics": [ "grabMzxmlSpectraVoltage" ] }, { "page": "grabSpectraInt", "title": "Extract the intensity information from the spectra of an mzML nodeset", 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